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Calico

Popular repositories Loading

  1. basenji basenji Public

    Sequential regulatory activity predictions with deep convolutional neural networks.

    Python 461 135

  2. borzoi borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    Python 216 30

  3. scBasset scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    Jupyter Notebook 100 13

  4. solo solo Public

    software to detect doublets

    Python 95 14

  5. scnym scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    Python 76 13

  6. baskerville baskerville Public

    Machine learning methods for DNA sequence analysis.

    Python 57 17

Repositories

Showing 10 of 57 repositories
  • sae-borzoi Public

    Sparse autoencoder interpretability for the Borzoi model

    calico/sae-borzoi’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Dec 22, 2025
  • mouse_cardiac_mri_segmentation Public

    Code for publication "Automated cardiac MRI analysis for robust profiling of heart failure models in mice"

    calico/mouse_cardiac_mri_segmentation’s past year of commit activity
    Python 0 MIT 0 0 2 Updated Dec 17, 2025
  • borzoi-paper Public

    Analyses related to the Borzoi paper.

    calico/borzoi-paper’s past year of commit activity
    Jupyter Notebook 24 Apache-2.0 4 1 0 Updated Dec 14, 2025
  • claman Public

    Calico Lipidomics and Metabolomics (CLaM) Analysis provides a suite of functions which support data manipulation, statistical analysis and visualizations of mzrollDB files created by MAVEN.

    calico/claman’s past year of commit activity
    R 3 0 7 0 Updated Dec 5, 2025
  • westminster Public

    Benchmarking baskerville models for regulatory sequence activity prediction

    calico/westminster’s past year of commit activity
    Python 2 Apache-2.0 3 1 2 Updated Oct 24, 2025
  • vworks-atc-plugin Public

    VWorks plugin for Thermofisher ATC

    calico/vworks-atc-plugin’s past year of commit activity
    C# 1 MIT 1 0 1 Updated Oct 23, 2025
  • calicolabs-auto-anubis-vialweighing Public

    ANUBIS: An automated vial weighing system with the Meca500 robotic arm

    calico/calicolabs-auto-anubis-vialweighing’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 29, 2025
  • shorkie-paper Public

    Data processing and analyses related to regulatory sequence prediction in yeast.

    calico/shorkie-paper’s past year of commit activity
    Python 3 Apache-2.0 1 1 0 Updated Sep 12, 2025
  • scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    calico/scBasset’s past year of commit activity
    Jupyter Notebook 100 Apache-2.0 13 3 0 Updated Sep 9, 2025
  • vworks-phenix-plugin Public

    VWorks Driver for Perkin Elmer Phenix

    calico/vworks-phenix-plugin’s past year of commit activity
    C# 3 MIT 0 0 0 Updated Sep 8, 2025

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